Basic Information
Locus ID:
gene.Posoc10g03480
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 10604201 | 10608666 | - | gene.Posoc10g03480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 43,772.80 Da | 54.52 | 62.33 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 334 | 374 | 4.57965E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 333 | 379 | 5.7E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 334 | 380 | 4.48E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 384 | 5.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 335 | 373 | 2.9E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 256 | 385 | 6.1E-10 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 3 | 61 | 690.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 335 | 374 | 11.353297 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 280 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020089224.1 | probable E3 ubiquitin-protein ligase LOG2 [Ananas comosus] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5F078 | RING-type E3 ubiquitin transferase OS=Ananas comosus OX=4615 GN=LOC109710854 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology