Basic Information
Locus ID:
gene.Posoc10g00090
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 1270024 | 1280287 | - | gene.Posoc10g00090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 143,359.41 Da | 51.23 | 77.52 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1143 | 1253 | 1.39288E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 564 | 891 | 7.42046E-89 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1134 | 1243 | 2.0E-16 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1007 | 1043 | 2.4E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 579 | 969 | 7.2E-70 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1006 | 1060 | 1.26E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 899 | 1300 | 8.64E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 537 | 891 | 3.73E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 536 | 630 | 3.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 662 | 745 | 3.0E-8 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 906 | 1300 | 1.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 747 | 901 | 1.6E-31 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1004 | 1062 | 3.3E-11 | IPR013083 |
| SMART | SM00487 | ultradead3 | 560 | 868 | 4.2E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1160 | 1243 | 9.7E-19 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1132 | 1296 | 15.075039 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 579 | 853 | 12.690811 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1007 | 1043 | 11.087743 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1022 | 1031 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 778 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_008800142.2 | helicase-like transcription factor CHR28 [Phoenix dactylifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CIQ5 | helicase-like transcription factor CHR28 OS=Phoenix dactylifera OX=42345 GN=LOC103714612 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology