Basic Information
Locus ID:
gene.Posoc09g07980
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
DNA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 134457946 | 134464142 | - | gene.Posoc09g07980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 34,468.59 Da | 37.59 | 74.27 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00476 | DNA polymerase family A | 188 | 284 | 1.8E-17 | IPR001098 |
| Pfam | PF04832 | SOUL heme-binding protein | 145 | 224 | 2.9E-9 | IPR006917 |
| SUPERFAMILY | SSF55136 | Probable bacterial effector-binding domain | 159 | 213 | 2.04E-8 | IPR011256 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 209 | 284 | 1.67E-20 | IPR043502 |
| Gene3D | G3DSA:1.10.150.20 | - | 242 | 295 | 1.1E-10 | - |
| Gene3D | G3DSA:3.20.80.10 | Regulatory factor, effector binding domain | 141 | 198 | 1.7E-9 | IPR011256 |
| PRINTS | PR00868 | DNA-polymerase family A (pol I) signature | 211 | 226 | 1.7E-11 | IPR002298 |
| PRINTS | PR00868 | DNA-polymerase family A (pol I) signature | 233 | 256 | 1.7E-11 | IPR002298 |
| PRINTS | PR00868 | DNA-polymerase family A (pol I) signature | 263 | 276 | 1.7E-11 | IPR002298 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00230 (Purine metabolism)
map00230 (Purine metabolism)
ko00240 (Pyrimidine metabolism)
map00240 (Pyrimidine metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko03030 (DNA replication)
map03030 (DNA replication)
ko03410 (Base excision repair)
map03410 (Base excision repair)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20540.1 | polymerase gamma 1. | 0 |
| RefSeq | XP_014622099.2 | DNA polymerase I B, chloroplastic/mitochondrial [Glycine max] | 0 |
| Q6Z4T3 | DNA polymerase I B, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0175600 PE=3 SV=1 | 0 | |
| TrEMBL | A0A438E552 | DNA polymerase I A, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=POLIA_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 11 | gene.Posoc01g09780, gene.Posoc01g18270, gene.Posoc01g19460 ... |