Basic Information
Locus ID:
gene.Posoc09g05600
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 124834835 | 124840839 | + | gene.Posoc09g05600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 83,144.44 Da | 50.06 | 72.83 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 597 | 633 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 549 | 2.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 477 | 735 | 2.29E-46 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 67 | 264 | 5.56E-19 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 65 | 277 | 1.8E-25 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 414 | 738 | 2.7E-95 | IPR015943 |
| SMART | SM00320 | WD40_4 | 467 | 506 | 6.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 591 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 681 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 549 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 595 | 633 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 695 | 736 | 34.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 516 | 551 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 516 | 558 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 602 | 635 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 602 | 635 | 10.68014 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 268 | 10.46412 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 620 | 634 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 536 | 550 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 493 | 507 | 4.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 536 | 550 | 4.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 620 | 634 | 4.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010260211.1 | PREDICTED: protein SPA1-RELATED 3-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YT62 | Protein SPA1-RELATED 3 OS=Anthurium amnicola OX=1678845 GN=SPA3_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology