halophFGD

Basic Information

Locus ID: gene.Posoc09g03610

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: Small glutamine-rich tetratricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr09	103685376	103689263	-	gene.Posoc09g03610

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.32	32,085.92 Da	50.68	74.55	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00515	Tetratricopeptide repeat	192	224	3.1E-9	IPR001440
SUPERFAMILY	SSF48452	TPR-like	163	248	1.84E-25	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	147	256	9.2E-29	IPR011990
SMART	SM00028	tpr_5	191	224	7.5E-8	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	191	224	9.7354	IPR019734

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K16365 (small glutamine-rich tetratricopeptide repeat-containing protein alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G08320.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_028757577.1	small glutamine-rich tetratricopeptide repeat-containing protein 2 isoform X2 [Prosopis alba]
Swiss-Prot	Q9LVH5	Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP64 PE=1 SV=1
TrEMBL	A0A0K9PSY1	TPR_REGION domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_182G00430 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Posidoniaceae	Posidonia oceanica	37	gene.Posoc01g06680, gene.Posoc01g06880, gene.Posoc01g26440 ... gene.Posoc01g29480, gene.Posoc01g33290, gene.Posoc02g00010, gene.Posoc02g01630, gene.Posoc02g10450, gene.Posoc02g14150, gene.Posoc02g16790, gene.Posoc02g17140, gene.Posoc02g17150, gene.Posoc03g20350, gene.Posoc03g22380, gene.Posoc03g25910, gene.Posoc04g02750, gene.Posoc04g03060, gene.Posoc04g12880, gene.Posoc04g19770, gene.Posoc05g21170, gene.Posoc06g09400, gene.Posoc06g16150, gene.Posoc06g22130, gene.Posoc07g00920, gene.Posoc07g06820, gene.Posoc07g09250, gene.Posoc08g04280, gene.Posoc08g05080, gene.Posoc08g07430, gene.Posoc08g08080, gene.Posoc08g09780, gene.Posoc08g12200, gene.Posoc09g03610, gene.Posoc09g08200, gene.Posoc10g06970, gene.Posoc10g06980, gene.Posoc10g06990