Basic Information
Locus ID:
gene.Posoc09g00620
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 37894935 | 37913390 | + | gene.Posoc09g00620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 30,012.55 Da | 29.79 | 80.96 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 1.8E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 77 | 5.02E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 7.1E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 1.2E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.769518 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 282 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_039142497.1 | binding partner of ACD11 1-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IJ87 | Binding partner of ACD11 1 OS=Cocos nucifera OX=13894 GN=COCNU_09G000830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology