Basic Information
Locus ID:
gene.Posoc08g15730
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 193233569 | 193238660 | - | gene.Posoc08g15730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 93,377.63 Da | 33.37 | 104.16 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 408 | 608 | 1.28052E-109 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 95 | 382 | 1.13811E-107 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 426 | 560 | 2.4E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 97 | 358 | 2.6E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 723 | 842 | 3.6E-10 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 405 | 630 | 9.75E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 86 | 382 | 2.22E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 706 | 820 | 1.44E-14 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 389 | 648 | 2.4E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 658 | 839 | 1.2E-21 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 68 | 388 | 4.8E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 435 | 608 | 2.0E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 723 | 820 | 15.02106 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 99 | 374 | 31.686832 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 408 | 631 | 21.46203 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 533 | 547 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 690 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_008792061.2 | ABC transporter C family member 3-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C591 | ABC transporter C family member 3-like isoform X4 OS=Phoenix dactylifera OX=42345 GN=LOC103708769 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology