Basic Information
Locus ID:
gene.Posoc08g14490
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 190496083 | 190502342 | + | gene.Posoc08g14490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 40,078.17 Da | 63.79 | 95.08 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 96 | 139 | 2.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 144 | 8.35E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 144 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 97 | 138 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 139 | 12.031935 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_009394200.2 | PREDICTED: RING-H2 finger protein ATL40-like [Musa acuminata subsp. malaccensis] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3S3PB88 | E3 ubiquitin-protein ligase ATL41-like protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02691100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16509, jg26749, jg29766 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023356 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl16842 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G33835 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G44578.1, AT2G44581.1, AT3G60966.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001745m.g.v1.0, Thhalv10006444m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g12620.v2.2, Sp4g26660.v2.2, Sp5g03040.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g001970.2N, BniB06g002990.2N, BniB06g062760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2274 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10897 |
| Poaceae | Oryza coarctata | 1 | Oco10G012280 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.132 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28425, nbisL1-mrna-8164 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14024 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000034l.11 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018803 |
| Rhizophoraceae | Rhizophora apiculata | 8 | nbisL1-mrna-17598, nbisL1-mrna-17613, nbisL1-mrna-22800 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22931 |
| Solanaceae | Solanum chilense | 2 | SOLCI001044200, SOLCI003768800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027701 |