Basic Information
Locus ID:
gene.Posoc08g08590
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 129127797 | 129136744 | - | gene.Posoc08g08590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 65,401.51 Da | 47.45 | 95.78 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 555 | 4.66913E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 512 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 297 | 6.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 555 | 4.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 343 | 0.0054 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 555 | 8.11E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 253 | 521 | 8.3E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 575 | 4.8E-9 | IPR015943 |
| SMART | SM00668 | ctlh | 94 | 151 | 0.0074 | IPR006595 |
| SMART | SM00667 | Lish | 61 | 93 | 0.0027 | IPR006594 |
| SMART | SM00320 | WD40_4 | 429 | 467 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 3.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 74.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 4.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 513 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 0.059 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 299 | 10.363778 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 9.31753 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 299 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 557 | 11.681953 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 344 | 9.99469 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 98 | 151 | 9.194637 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 14.752563 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 372 | 386 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 285 | 299 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020270323.1 | WD repeat-containing protein 26-like isoform X1 [Asparagus officinalis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Y0T8 | WD repeat-containing protein 26 OS=Anthurium amnicola OX=1678845 GN=wdr26_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology