Basic Information
Locus ID:
gene.Posoc08g07110
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 70384004 | 70392438 | + | gene.Posoc08g07110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 65,349.11 Da | 41.50 | 94.60 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 556 | 2.12787E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 299 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 513 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 1.5E-8 | IPR001680 |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 308 | 379 | 2.3E-4 | IPR013979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 556 | 3.36E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 577 | 5.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 523 | 2.0E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0013 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 3.2E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 4.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 7.7E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 9.657827 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 560 | 12.156496 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.30485 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 388 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 348 | 11.154684 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 373 | 387 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 4.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 373 | 387 | 4.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 4.7E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_008775985.1 | WD repeat-containing protein 26 homolog [Phoenix dactylifera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Y0T8 | WD repeat-containing protein 26 OS=Anthurium amnicola OX=1678845 GN=wdr26_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology