Basic Information
Locus ID:
gene.Posoc08g05830
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 63010351 | 63028717 | + | gene.Posoc08g05830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 132,851.94 Da | 50.76 | 79.85 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1049 | 1154 | 1.1E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 456 | 782 | 5.29623E-85 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1047 | 1144 | 3.4E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 897 | 933 | 6.5E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 476 | 859 | 2.9E-65 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 791 | 1201 | 4.25E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 439 | 782 | 1.06E-42 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 894 | 947 | 2.7E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 534 | 634 | 7.9E-8 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 639 | 792 | 4.9E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 432 | 525 | 5.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 958 | 1201 | 3.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 881 | 948 | 2.1E-11 | IPR013083 |
| SMART | SM00487 | ultradead3 | 452 | 749 | 7.4E-25 | IPR014001 |
| SMART | SM00184 | ring_2 | 897 | 935 | 7.3E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1061 | 1144 | 1.1E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 566 | 744 | 11.747702 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1041 | 1197 | 14.855946 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 897 | 933 | 10.409105 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 912 | 921 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_008789526.2 | helicase-like transcription factor CHR28 isoform X2 [Phoenix dactylifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P1E4 | Putative DNA repair helicase rad5,16 OS=Zostera marina OX=29655 GN=ZOSMA_442G00010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology