Basic Information
Locus ID:
gene.Posoc08g05620
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 61147510 | 61162954 | + | gene.Posoc08g05620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 204,460.16 Da | 46.78 | 85.80 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1460 | 1887 | 4.08604E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1563 | 1892 | 2.4E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1449 | 1885 | 3.92E-99 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 77 | 620 | 6.4E-40 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1402 | 1651 | 7.8E-45 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1762 | 1890 | 1.7E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 167 | 646 | 2.4E-55 | IPR011989 |
| SMART | SM00119 | hect_3 | 1471 | 1892 | 7.7E-82 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1578 | 1892 | 57.559906 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 1070 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1039 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 1017 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010265985.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Nelumbo nucifera] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PX68 | HECT-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_159G00050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology