Basic Information
Locus ID:
gene.Posoc08g04280
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 46712300 | 46714827 | - | gene.Posoc08g04280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 24,447.25 Da | 56.85 | 71.90 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 161 | 220 | 7.3E-15 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 160 | 220 | 3.79E-13 | IPR036419 |
| Gene3D | G3DSA:3.30.1140.32 | - | 150 | 221 | 3.7E-30 | IPR036419 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 103 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53870.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_021901978.1 | 40S ribosomal protein S3-3-like [Carica papaya] | 0 |
| Q9M339 | Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A834YW66 | Ribosomal_S3_C domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_021081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 37 | gene.Posoc01g06680, gene.Posoc01g06880, gene.Posoc01g26440 ... |