Basic Information
Locus ID:
gene.Posoc08g03910
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 41817218 | 41826242 | - | gene.Posoc08g03910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 83,471.04 Da | 55.89 | 81.99 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 228 | 361 | 1.38432E-61 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 227 | 2.77007E-104 | - |
| Pfam | PF16124 | RecQ zinc-binding | 364 | 437 | 1.1E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 248 | 350 | 1.0E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 42 | 207 | 1.9E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 77 | 373 | 1.03E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 227 | 3.7E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 228 | 453 | 4.2E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 271 | 352 | 5.5E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 34 | 236 | 1.7E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 28 | 441 | 4.1E-141 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 247 | 392 | 18.575558 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 220 | 23.775497 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 749 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_034699819.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Vitis riparia] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PZQ0 | ATP-dependent DNA helicase OS=Zostera marina OX=29655 GN=ZOSMA_144G00260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology