Basic Information
Locus ID:
gene.Posoc08g03760
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 41123812 | 41129046 | - | gene.Posoc08g03760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 47,092.29 Da | 55.38 | 70.23 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 271 | 345 | 1.01851E-34 | - |
| CDD | cd12352 | RRM1_TIA1_like | 67 | 137 | 7.72568E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 151 | 225 | 8.48415E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 67 | 133 | 6.9E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 152 | 222 | 1.4E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 273 | 338 | 1.1E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 50 | 143 | 4.3E-23 | IPR035979 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 2 | 49 | 1.88E-5 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 144 | 234 | 1.48E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 264 | 352 | 3.94E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 249 | 350 | 1.5E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 148 | 5.9E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 149 | 229 | 4.1E-24 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 151 | 224 | 0.004 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 66 | 135 | 1.3E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 272 | 341 | 7.7E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 151 | 224 | 2.8E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 150 | 228 | 16.977684 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 271 | 345 | 15.374476 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 65 | 139 | 15.1357 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_042486815.1 | oligouridylate-binding protein 1-like [Macadamia integrifolia] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AH62 | oligouridylate-binding protein 1-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104600504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology