Basic Information
Locus ID:
gene.Posoc08g01350
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 8091431 | 8094637 | - | gene.Posoc08g01350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 71,675.62 Da | 38.98 | 80.41 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 569 | 614 | 1.41423E-21 | - |
| Pfam | PF00628 | PHD-finger | 570 | 615 | 4.4E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 557 | 615 | 2.66E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 554 | 618 | 2.5E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 569 | 615 | 8.5E-7 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 570 | 614 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 299 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66170.1 | RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | 0 |
| RefSeq | XP_009405163.1 | PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Musa acuminata subsp. malaccensis] | 0 |
| Q7X6Y7 | PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PV72 | PHD domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_159G00130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology