Basic Information
Locus ID:
gene.Posoc08g00950
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 6293782 | 6295485 | + | gene.Posoc08g00950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 64,649.78 Da | 52.02 | 73.93 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 470 | 557 | 3.8E-30 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 296 | 325 | 0.0016 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 269 | 292 | 0.15 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 266 | 437 | 1.7E-24 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 296 | 328 | 2.3E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 293 | 327 | 10.325603 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 190 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_008810384.2 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Phoenix dactylifera] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PRR8 | Pentatricopeptide repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_18G00320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology