Basic Information
Locus ID:
gene.Posoc08g00620
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 4493427 | 4504035 | + | gene.Posoc08g00620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 41,313.85 Da | 54.60 | 83.42 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 341 | 383 | 4.2866E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.58464E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 263 | 319 | 4.3E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 167 | 204 | 1.5E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 345 | 380 | 1.9E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.7E-20 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 89 | 9.91E-24 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 163 | 216 | 8.36E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 259 | 324 | 8.5E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 328 | 387 | 2.92E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 255 | 319 | 3.2E-26 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 1.3E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 159 | 209 | 1.1E-19 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 337 | 384 | 9.1E-25 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.6E-22 | IPR000626 |
| SMART | SM00727 | CBM | 261 | 304 | 8.5E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 166 | 206 | 0.0028 | IPR015940 |
| SMART | SM00165 | uba_6 | 345 | 382 | 4.0E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 388 | 1.7E-117 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.653175 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 342 | 383 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 164 | 207 | 11.872175 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 289 | 311 | 2.5E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 339 | 355 | 2.5E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 371 | 386 | 2.5E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 356 | 370 | 2.5E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 116 | - | - |
| Coils | Coil | Coil | 290 | 310 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_009399729.1 | PREDICTED: ubiquitin receptor RAD23d-like isoform X1 [Musa acuminata subsp. malaccensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A804J1B1 | Ubiquitin receptor RAD23 OS=Musa acuminata subsp. malaccensis OX=214687 GN=103984049 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology