Basic Information
Locus ID:
gene.Posoc07g16020
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 199243083 | 199270772 | - | gene.Posoc07g16020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 84,098.59 Da | 45.45 | 88.50 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 541 | 600 | 9.8E-6 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 262 | 371 | 2.8E-8 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 538 | 602 | 5.79E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 138 | 398 | 1.92E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 696 | 745 | 9.92E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 142 | 404 | 1.9E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 531 | 609 | 3.1E-8 | - |
| SMART | SM00358 | DRBM_3 | 669 | 737 | 0.23 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 537 | 601 | 3.4E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 204 | 381 | 5.0E-12 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 536 | 602 | 11.795446 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 145 | 394 | 17.342796 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 505 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_010923073.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Elaeis guineensis] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A843U7R1 | protein-serine/threonine phosphatase OS=Colocasia esculenta OX=4460 GN=Taro_010205 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology