Basic Information
Locus ID:
gene.Posoc07g15600
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 198163468 | 198170965 | - | gene.Posoc07g15600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 103,690.98 Da | 37.51 | 74.22 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 467 | 523 | 1.85497E-27 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 533 | 891 | 1.8E-32 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 469 | 516 | 4.6E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 364 | 892 | 7.4E-78 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 460 | 523 | 2.75E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 462 | 910 | 1.1E-215 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 686 | 858 | 1.1E-215 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 157 | 317 | 4.6E-44 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 348 | 454 | 2.2E-15 | - |
| SMART | SM00439 | BAH_4 | 218 | 332 | 1.9E-10 | IPR001025 |
| SMART | SM00298 | chromo_7 | 467 | 526 | 7.5E-12 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 218 | 332 | 16.714493 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 468 | 521 | 14.041701 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 365 | 899 | 45.545601 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 538 | 550 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 491 | 511 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 581 | 595 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 366 | 382 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 627 | 640 | 1.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
| Coils | Coil | Coil | 916 | 919 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_020103892.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Ananas comosus] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | G4XDS4 | CMT-type DNA-methyltransferase OS=Posidonia oceanica OX=55489 GN=CMT1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology