Basic Information
Locus ID:
gene.Posoc07g15130
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Clathrin assembly protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 195634070 | 195641961 | - | gene.Posoc07g15130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 40,156.94 Da | 43.43 | 78.92 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07651 | ANTH domain | 1 | 60 | 4.7E-13 | IPR011417 |
| Pfam | PF11623 | NAD(P)H dehydrogenase subunit S | 88 | 109 | 1.3E-7 | IPR021659 |
| SUPERFAMILY | SSF89009 | GAT-like domain | 1 | 59 | 1.69E-12 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 83 | 121 | 3.5E-9 | - |
| Gene3D | G3DSA:1.20.58.150 | ANTH domain | 1 | 62 | 9.1E-10 | IPR014712 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14910.2 | - | 0 |
| RefSeq | XP_020105861.1 | putative clathrin assembly protein At2g01600 isoform X2 [Ananas comosus] | 0 |
| P94017 | Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana OX=3702 GN=At1g14910 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6P5GB55 | putative clathrin assembly protein At2g01600 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109722285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105470 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG21.853, evm.TU.LG26.828 |
| Posidoniaceae | Posidonia oceanica | 12 | gene.Posoc01g21050, gene.Posoc01g36390, gene.Posoc04g12350 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000459 |