HalophFGD

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Basic Information
Locus ID: gene.Posoc07g12900
Species & Taxonomic ID: Posidonia oceanica & 55489
Genome Assembly: GCA_037176725.1
Short Name: ABO1
Description: Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation
Maps and Mapping Data
Chromosome Start End Strand ID
Chr07 184259634 184261721 - gene.Posoc07g12900
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.17 27,583.29 Da 81.18 94.56 0.22
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF04762 IKI3 family 16 104 3.5E-16 IPR006849
Gene Ontology
Biological Process:
GO:0002098 (tRNA wobble uridine modification)
Cellular Component:
GO:0033588 (elongator holoenzyme complex)
KEGG Pathway
KO Term:
K11373 (elongator complex protein 1)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_008810803.1 elongator complex protein 1 [Phoenix dactylifera] 0
TrEMBL A0A0K9P3H5 Elongator complex protein 1 OS=Zostera marina OX=29655 GN=ZOSMA_446G00140 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 5 jg14018, jg15641, jg2320, jg33121, jg33991
Aizoaceae Mesembryanthemum crystallinum 2 gene_10845, gene_16110
Amaranthaceae Atriplex hortensis 4 Ah014845, Ah018937, Ah020886, Ah020888
Amaranthaceae Beta vulgaris 1 BVRB_8g192200
Amaranthaceae Salicornia bigelovii 4 Sbi_jg15542, Sbi_jg24823, Sbi_jg56365, Sbi_jg8691
Amaranthaceae Salicornia europaea 2 Seu_jg19917, Seu_jg26804
Amaranthaceae Suaeda aralocaspica 2 GOSA_00006565, GOSA_00022232
Amaranthaceae Suaeda glauca 4 Sgl02028, Sgl07181, Sgl42510, Sgl47240
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000003949, gene:ENSEOMG00000009536 ...
gene:ENSEOMG00000030442, gene:ENSEOMG00000035201, gene:ENSEOMG00000042441, gene:ENSEOMG00000044404
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.3AG0002520, CQ.Regalona.r1.3BG0002650 ...
CQ.Regalona.r1.5BG0017860, CQ.Regalona.r1.8AG0017670, CQ.Regalona.r1.8BG0018750
Anacardiaceae Pistacia vera 2 pistato.v30182440, pistato.v30264420
Apiaceae Apium graveolens 5 Ag10G00070, Ag10G02628, Ag10G02629, Ag10G02776, Ag2G01985
Arecaceae Cocos nucifera 6 COCNU_01G004360, COCNU_07G006970, COCNU_08G006480 ...
COCNU_08G006490, COCNU_10G005190, COCNU_11G009130
Arecaceae Phoenix dactylifera 6 gene-LOC103699530, gene-LOC103707121, gene-LOC103710468 ...
gene-LOC103711156, gene-LOC103714157, gene-LOC103716708
Asparagaceae Asparagus officinalis 3 AsparagusV1_05.2555.V1.1, AsparagusV1_08.401.V1.1 ...
AsparagusV1_10.1084.V1.1
Asteraceae Flaveria trinervia 4 Ftri3G08493, Ftri4G01708, Ftri4G32617, Ftri8G02497
Brassicaceae Arabidopsis thaliana 2 AT5G07270.1, AT5G57740.1
Brassicaceae Eutrema salsugineum 2 Thhalv10013287m.g.v1.0, Thhalv10013312m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp6g19420.v2.2, Sp6g35620.v2.2
Brassicaceae Brassica nigra 4 BniB02g037110.2N, BniB02g053620.2N, BniB05g028470.2N ...
BniB05g037360.2N
Casuarinaceae Casuarina equisetifolia 3 Ceq02G2098, Ceq03G1173, Ceq05G0537
Casuarinaceae Casuarina glauca 3 Cgl02G2171, Cgl03G1280, Cgl05G0569
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g05030, gene.Cymno05g08760, gene.Cymno14g04760
Dunaliellaceae Dunaliella salina 3 Dusal.0060s00020.v1.0, Dusal.0120s00020.v1.0 ...
Dusal.0250s00010.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate02g12330, gene.Thate04g24770, gene.Thate07g07340
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-11810
Nitrariaceae Nitraria sibirica 2 evm.TU.LG01.2698, evm.TU.LG07.407
Plantaginaceae Plantago ovata 3 Pov_00000667, Pov_00015626, Pov_00040925
Plumbaginaceae Limonium bicolor 1 Lb4G24381
Poaceae Echinochloa crus-galli 12 AH01.3149, AH06.482, AH07.3747, AH08.906, BH01.3508 ...
BH06.165, BH07.1940, BH07.3571, CH06.154, CH07.3636, CH08.1047, CH09.292
Poaceae Eleusine coracana subsp. coracana 8 gene-QOZ80_2AG0114220, gene-QOZ80_2AG0148590 ...
gene-QOZ80_2BG0168020, gene-QOZ80_2BG0203970, gene-QOZ80_6AG0507080, gene-QOZ80_6BG0459140, gene-QOZ80_8AG0624260, gene-QOZ80_8BG0651980
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.1HG0051110.1, HORVU.MOREX.r3.6HG0623070.1 ...
HORVU.MOREX.r3.7HG0643200.1, HORVU.MOREX.r3.7HG0658700.1
Poaceae Lolium multiflorum 6 gene-QYE76_012144, gene-QYE76_016444, gene-QYE76_026086 ...
gene-QYE76_026289, gene-QYE76_032299, gene-QYE76_032308
Poaceae Oryza coarctata 8 Oco03G023930, Oco04G024470, Oco11G001310, Oco12G001220 ...
Oco15G005170, Oco16G004890, Oco19G008370, Oco20G008220
Poaceae Oryza sativa 4 LOC_Os02g54860.1, LOC_Os06g03800.1, LOC_Os08g15840.5 ...
LOC_Os10g37730.1
Poaceae Paspalum vaginatum 4 gene-BS78_01G309600, gene-BS78_01G359000 ...
gene-BS78_07G100700, gene-BS78_10G021200
Poaceae Puccinellia tenuiflora 6 Pt_Chr0203812, Pt_Chr0303694, Pt_Chr0401920, Pt_Chr0402814 ...
Pt_Chr0503012, Pt_Chr0503018
Poaceae Sporobolus alterniflorus 14 Chr05G014770, Chr05G017530, Chr06G000630, Chr06G029210 ...
Chr09G003030, Chr09G017950, Chr11G024010, Chr13G002140, Chr13G021810, Chr15G001870, Chr15G020400, Chr16G003470, Chr17G003170, Chr29G008820
Poaceae Thinopyrum elongatum 5 Tel1E01G324900, Tel2E01G982100, Tel6E01G626500 ...
Tel7E01G130600, Tel7E01G296500
Poaceae Triticum dicoccoides 7 gene_TRIDC1AG028640, gene_TRIDC1BG032970 ...
gene_TRIDC6AG052980, gene_TRIDC6BG061580, gene_TRIDC7AG006520, gene_TRIDC7AG017780, gene_TRIDC7BG007140
Poaceae Triticum aestivum 12 TraesCS1A02G189100.1, TraesCS1B02G196800.1 ...
TraesCS1D02G187300.1, TraesCS4A02G429100.1, TraesCS6A02G352300.1, TraesCS6B02G385200.1, TraesCS6D02G335000.2, TraesCS7A02G060700.1, TraesCS7A02G145900.1, TraesCS7B02G048300.1, TraesCS7D02G055500.1, TraesCS7D02G147400.1
Poaceae Zea mays 5 Zm00001eb021320_P001, Zm00001eb178040_P001 ...
Zm00001eb192640_P001, Zm00001eb269490_P002, Zm00001eb378520_P001
Poaceae Zoysia japonica 6 nbis-gene-34432, nbis-gene-36123, nbis-gene-44701 ...
nbis-gene-51169, nbis-gene-51170, nbis-gene-8460
Poaceae Zoysia macrostachya 5 Zma_g12784, Zma_g14600, Zma_g15541, Zma_g22715, Zma_g31271
Portulacaceae Portulaca oleracea 4 evm.TU.LG02.2654, evm.TU.LG11.1603, evm.TU.LG16.1442 ...
evm.TU.LG23.879
Posidoniaceae Posidonia oceanica 10 gene.Posoc01g19400, gene.Posoc01g36140, gene.Posoc02g03990 ...
gene.Posoc02g24810, gene.Posoc03g02670, gene.Posoc06g11590, gene.Posoc06g11610, gene.Posoc06g16450, gene.Posoc07g12900, gene.Posoc09g02980
Rhizophoraceae Bruguiera sexangula 3 evm.TU.Scaffold_10_RagTag.211, evm.TU.Scaffold_4_RagTag.147 ...
evm.TU.Scaffold_11_RagTag.1356
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-12655, nbisL1-mrna-13366, nbisL1-mrna-29198
Rhizophoraceae Ceriops tagal 3 nbisL1-mrna-15068, nbisL1-mrna-16283, nbisL1-mrna-7227
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-12926, nbisL1-mrna-16639, nbisL1-mrna-2137
Rhizophoraceae Kandelia candel 3 evm.TU.utg000008l.89, evm.TU.utg000010l.353 ...
evm.TU.utg000033l.142
Rhizophoraceae Kandelia obovata 4 Maker00000037, Maker00008459, Maker00008595, Maker00014619
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-1060, nbisL1-mrna-16627, nbisL1-mrna-2368
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-14598, nbisL1-mrna-20614, nbisL1-mrna-6257
Salicaceae Populus euphratica 3 populus_peu05515, populus_peu29257, populus_peu30619
Solanaceae Lycium barbarum 2 gene-LOC132602871, gene-LOC132631864
Solanaceae Solanum chilense 1 SOLCI006529100
Solanaceae Solanum pennellii 2 gene-LOC107015481, gene-LOC107026410
Tamaricaceae Reaumuria soongarica 2 STRG.18817_chr07_-, gene_4140
Tamaricaceae Tamarix chinensis 3 TC06G1662, TC12G0417, TC12G0418
Zosteraceae Zostera marina 3 Zosma01g04350.v3.1, Zosma01g35410.v3.1, Zosma03g12500.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.