Basic Information
Locus ID:
gene.Posoc07g12670
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 182565464 | 182574012 | - | gene.Posoc07g12670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 43,567.11 Da | 52.24 | 79.57 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 291 | 0.0024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 371 | 1.43E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 390 | 1.2E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 33 | 208 | 3.3E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 250 | 291 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 39 | 73 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 247 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 160 | 91.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_008789933.2 | autophagy-related protein 18a isoform X1 [Phoenix dactylifera] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C220 | autophagy-related protein 18a isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103707285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology