Basic Information
Locus ID:
gene.Posoc07g09260
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 93828644 | 93870066 | + | gene.Posoc07g09260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 140,901.19 Da | 48.64 | 83.63 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 144 | 268 | 2.53157E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 285 | 613 | 1.56923E-167 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 712 | 964 | 1.3E-72 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 974 | 1184 | 5.1E-53 | IPR029346 |
| Pfam | PF00917 | MATH domain | 149 | 269 | 4.4E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 287 | 608 | 1.3E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 282 | 638 | 1.1E-95 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 143 | 272 | 1.14E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 890 | 987 | 9.2E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 772 | 889 | 2.5E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 141 | 283 | 1.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 284 | 612 | 5.4E-88 | - |
| SMART | SM00061 | math_3 | 144 | 248 | 3.2E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 142 | 267 | 37.701492 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 287 | 611 | 39.445221 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 527 | 544 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 288 | 303 | - | IPR018200 |
| Coils | Coil | Coil | 627 | 651 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_038985461.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X4 [Phoenix dactylifera] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AFG5 | ubiquitinyl hydrolase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103707271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology