Basic Information
Locus ID:
gene.Posoc07g08340
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Nuclear pore complex protein NUP160 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 67134609 | 67224954 | - | gene.Posoc07g08340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 170,011.41 Da | 45.88 | 92.76 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17238 | Family of unknown function (DUF5311) | 560 | 747 | 2.4E-68 | IPR035192 |
| Pfam | PF11715 | Nucleoporin Nup120/160 | 79 | 539 | 1.7E-30 | - |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 44 | 53 | 9.15E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 334 | 2.2E-5 | IPR036322 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G33410.2 | SUPPRESSOR OF AUXIN RESISTANCE1. | 0 |
| RefSeq | XP_010929399.1 | nuclear pore complex protein NUP160 [Elaeis guineensis] | 0 |
| Q9C811 | Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PM63 | DUF5311 domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_1G01060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30029 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17674 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012470 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g146170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42460, Sbi_jg45073 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27091 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002242 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31817, Sgl37096 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000281, gene:ENSEOMG00000000630 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0009480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179420 |
| Apiaceae | Apium graveolens | 2 | Ag7G01679, Ag7G01681 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G013580 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715534 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.788.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G17728 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G33410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006552m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g28860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g015660.2N, BniB03g035940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0232 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0222 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05390 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0147s00016.v1.0, Dusal.0147s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g10040 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3299 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1097 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001838 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11846 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.460, CH03.4468 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101430, gene-QOZ80_2BG0154770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0557980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007685, gene-QYE76_020294, gene-QYE76_020295 |
| Poaceae | Oryza coarctata | 2 | Oco03G002320, Oco04G002220 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G035900 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G035040, Chr15G026330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G247800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG036190, gene_TRIDC6AG014820 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G112600.1, TraesCS6B02G141600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb232140_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29969, nbis-gene-29970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1975, evm.TU.LG23.234 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g08340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.120 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19613 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3984 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22300 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.69 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010329 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8033 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22633, nbisL1-mrna-22634 |
| Salicaceae | Populus euphratica | 1 | populus_peu03813 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598547 |
| Solanaceae | Solanum chilense | 2 | SOLCI002877100, SOLCI002877200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007780 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7161 |
| Tamaricaceae | Tamarix chinensis | 11 | TC01G4040, TC02G0734, TC03G0023, TC03G0873, TC05G0362 ... |
| Zosteraceae | Zostera marina | 2 | Zosma02g06600.v3.1, Zosma469g00050.v3.1 |