Basic Information
Locus ID:
gene.Posoc07g07740
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 51683540 | 51685777 | - | gene.Posoc07g07740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 17,624.87 Da | 35.38 | 77.02 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11623 | NAD(P)H dehydrogenase subunit S | 4 | 27 | 5.7E-9 | IPR021659 |
| Gene3D | G3DSA:2.30.30.140 | - | 3 | 37 | 2.1E-10 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23890.1 | 0 | |
| RefSeq | XP_034675925.1 | RNA-binding protein 24-A isoform X1 [Vitis riparia] | 0 |
| Q9T0A4 | NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1 | 0 | |
| TrEMBL | A0A438K3X7 | Putative RNA-binding protein ARP1 OS=Vitis vinifera OX=29760 GN=ARP1_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105470 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG21.853, evm.TU.LG26.828 |
| Posidoniaceae | Posidonia oceanica | 12 | gene.Posoc01g21050, gene.Posoc01g36390, gene.Posoc04g12350 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000459 |