Basic Information
Locus ID:
gene.Posoc07g07470
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 47035459 | 47049128 | - | gene.Posoc07g07470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 23,956.16 Da | 53.09 | 84.66 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 2.02275E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 85 | 171 | 7.7E-24 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 6.3E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 78 | 3.27E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 98 | 4.8E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.6E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.692913 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 180 | 14.003248 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.8E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.8E-31 | IPR002100 |
| Coils | Coil | Coil | 118 | 138 | - | - |
| Coils | Coil | Coil | 144 | 171 | - | - |
| Coils | Coil | Coil | 95 | 115 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.1 | AGAMOUS-like 14. AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. | 0 |
| RefSeq | NP_001267909.1 | MADS-box protein [Vitis vinifera] | 0 |
| Q38838 | Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2 | 0 | |
| TrEMBL | D1MDP7 | Suppressor of overexpression of CO 1 OS=Vitis vinifera OX=29760 GN=SOC1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology