Basic Information
Locus ID:
gene.Posoc07g06290
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 33786980 | 33798293 | - | gene.Posoc07g06290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 56,350.66 Da | 39.53 | 69.43 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 292 | 522 | 4.09681E-119 | - |
| CDD | cd00035 | ChtBD1 | 239 | 277 | 6.42525E-17 | - |
| Pfam | PF00187 | Chitin recognition protein | 239 | 277 | 9.7E-12 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 291 | 522 | 5.8E-136 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 287 | 528 | 1.66E-110 | IPR023346 |
| SUPERFAMILY | SSF48452 | TPR-like | 121 | 170 | 1.08E-5 | IPR011990 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 239 | 280 | 1.15E-10 | IPR036861 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 104 | 186 | 1.5E-5 | IPR011990 |
| Gene3D | G3DSA:1.10.530.10 | - | 296 | 528 | 8.6E-122 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 237 | 279 | 6.7E-15 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 374 | 431 | 8.6E-122 | - |
| SMART | SM00270 | ChitinBD_3 | 239 | 277 | 4.2E-14 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 237 | 279 | 10.816219 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 435 | 445 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 309 | 331 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 249 | 268 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 247 | 255 | 1.0E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 262 | 269 | 1.0E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 255 | 262 | 1.0E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_020079844.1 | chitinase 1-like [Ananas comosus] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6V7NRJ2 | chitinase OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS4450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology