Basic Information
Locus ID:
gene.Posoc07g06270
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 33776066 | 33777237 | + | gene.Posoc07g06270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 33,031.64 Da | 38.57 | 60.35 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 79 | 309 | 4.45909E-116 | - |
| CDD | cd00035 | ChtBD1 | 26 | 64 | 3.36576E-14 | - |
| Pfam | PF00187 | Chitin recognition protein | 26 | 64 | 4.9E-12 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 78 | 309 | 1.4E-136 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 26 | 67 | 5.63E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 74 | 315 | 3.94E-111 | IPR023346 |
| Gene3D | G3DSA:3.30.60.10 | - | 24 | 66 | 3.3E-15 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 83 | 315 | 2.1E-122 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 161 | 218 | 2.1E-122 | - |
| SMART | SM00270 | ChitinBD_3 | 26 | 64 | 4.2E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 2 | 316 | 2.4E-126 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 24 | 66 | 10.816219 | IPR001002 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | 6.0 | - |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 222 | 232 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 96 | 118 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 36 | 55 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 42 | 49 | 2.8E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 34 | 42 | 2.8E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 49 | 56 | 2.8E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_020079844.1 | chitinase 1-like [Ananas comosus] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6V7NRJ2 | chitinase OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS4450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology