Basic Information
Locus ID:
gene.Posoc07g05800
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 29145893 | 29374152 | - | gene.Posoc07g05800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 513,099.84 Da | 43.76 | 91.89 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3541 | 3711 | 2.7E-7 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 767 | 988 | 8.3E-31 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 210 | 320 | 3.1E-29 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4394 | 4515 | 4.8E-8 | IPR009291 |
| Pfam | PF00169 | PH domain | 1009 | 1117 | 6.6E-6 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2437 | 2584 | 8.4E-12 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 341 | 582 | 4.6E-63 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2207 | 2366 | 2.5E-10 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 1005 | 1120 | 8.21E-7 | - |
| SMART | SM00233 | PH_update | 1007 | 1120 | 1.1E-5 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 1006 | 1118 | 8.6026 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 43 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_010919819.1 | uncharacterized protein LOC105043803 isoform X1 [Elaeis guineensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R3E9 | uncharacterized protein LOC105043803 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105043803 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology