Basic Information
Locus ID:
gene.Posoc07g02060
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 5969101 | 5984109 | - | gene.Posoc07g02060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 79,954.67 Da | 40.89 | 88.11 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 70 | 278 | 1.67639E-131 | - |
| CDD | cd18794 | SF2_C_RecQ | 279 | 415 | 5.1925E-71 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 303 | 405 | 2.0E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 90 | 258 | 3.1E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 603 | 662 | 5.9E-8 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 418 | 474 | 4.5E-13 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 603 | 668 | 2.4E-5 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 127 | 422 | 8.44E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 479 | 579 | 3.0E-23 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 279 | 475 | 2.5E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 597 | 669 | 8.6E-12 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 278 | 7.5E-90 | IPR027417 |
| SMART | SM00487 | ultradead3 | 84 | 287 | 1.9E-22 | IPR014001 |
| SMART | SM00956 | RQC_2 | 483 | 580 | 0.0064 | IPR018982 |
| SMART | SM00490 | helicmild6 | 325 | 406 | 3.4E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 81 | 506 | 2.0E-162 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 594 | 673 | 12.122572 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 296 | 445 | 20.044479 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 271 | 23.329092 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 707 | - | - |
| Coils | Coil | Coil | 511 | 531 | - | - |
| Coils | Coil | Coil | 2 | 36 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_038979711.1 | ATP-dependent DNA helicase Q-like 2 isoform X4 [Phoenix dactylifera] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A443P901 | ATP-dependent DNA helicase OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01619000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology