Basic Information
Locus ID:
gene.Posoc07g01630
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 5144539 | 5146384 | + | gene.Posoc07g01630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 52,605.20 Da | 43.67 | 73.15 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 180 | 452 | 4.9548E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 313 | 2.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 367 | 0.0042 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 197 | 254 | 9.1E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 452 | 0.0029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 169 | 452 | 3.11E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 103 | 455 | 6.0E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 232 | 270 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 229 | 4.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 452 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 367 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 410 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 420 | 453 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 420 | 453 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 197 | 238 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 281 | 315 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 281 | 322 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 197 | 229 | 8.676514 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 439 | 453 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 300 | 314 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_010918104.1 | cell division cycle 20.2, cofactor of APC complex [Elaeis guineensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R5I3 | cell division cycle 20.2, cofactor of APC complex OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology