Basic Information
Locus ID:
gene.Posoc07g00480
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 1502438 | 1503505 | - | gene.Posoc07g00480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 38,739.36 Da | 61.99 | 71.63 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 148 | 191 | 5.49201E-18 | - |
| Pfam | PF13639 | Ring finger domain | 148 | 191 | 3.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 202 | 1.14E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 196 | 5.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 149 | 190 | 3.0E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 145 | 199 | 0.0086 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 191 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 355 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010919941.1 | E3 ubiquitin-protein ligase Os04g0590900 [Elaeis guineensis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IF09 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_07G003810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology