Basic Information
Locus ID:
gene.Posoc06g21880
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 181539391 | 181546229 | - | gene.Posoc06g21880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 56,386.36 Da | 52.76 | 87.60 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 29 | 184 | 1.68305E-22 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 4 | 322 | 1.8E-48 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 63 | 98 | 1.9E-5 | IPR002934 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 324 | 444 | 7.26E-22 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 8 | 180 | 4.5E-34 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 185 | 323 | 8.37E-42 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 4 | 321 | 1.0E-92 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 22 | 178 | 1.0E-92 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 325 | 425 | 7.0E-11 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 477 | 4.7E-128 | IPR014492 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06560.1 | poly(A) polymerase 3. Encodes a poly(A) polymerase. Located in the cytoplasm. | 0 |
| RefSeq | XP_010921414.2 | nuclear poly(A) polymerase 3 isoform X2 [Elaeis guineensis] | 0 |
| Q56XM9 | Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=PAPS3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9RD46 | polynucleotide adenylyltransferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105044983 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology