Basic Information
Locus ID:
gene.Posoc06g21340
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 152640284 | 152642176 | + | gene.Posoc06g21340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 50,580.64 Da | 51.01 | 75.59 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 105 | 422 | 1.9E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 70 | 456 | 1.8E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 66 | 466 | 2.1E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 316 | 337 | 0.44 | IPR006626 |
| SMART | SM00710 | pbh1 | 263 | 284 | 6100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 236 | 262 | 660.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 345 | 366 | 370.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 286 | 306 | 3500.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 293 | 306 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010921358.1 | polygalacturonase At1g48100 [Elaeis guineensis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843UMT0 | Polygalacturonase At1g80170 OS=Colocasia esculenta OX=4460 GN=Taro_017319 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology