HalophFGD

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Basic Information
Locus ID: gene.Posoc06g19410
Species & Taxonomic ID: Posidonia oceanica & 55489
Genome Assembly: GCA_037176725.1
Description: WD40 repeats
Maps and Mapping Data
Chromosome Start End Strand ID
Chr06 118939589 118944836 + gene.Posoc06g19410
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.93 23,652.69 Da 59.12 65.53 -0.64
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF50978 WD40 repeat-like 33 68 3.66E-6 IPR036322
Gene3D G3DSA:2.130.10.10 - 15 95 2.9E-8 IPR015943
SMART SM00320 WD40_4 28 66 4.2E-5 IPR001680
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G32551.1 LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. 0
RefSeq XP_023522276.1 transcriptional corepressor LEUNIG_HOMOLOG-like [Cucurbita pepo subsp. pepo] 0
Swiss-Prot Q9FUY2 Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 0
TrEMBL I3S0V9 WD_REPEATS_REGION domain-containing protein OS=Medicago truncatula OX=3880 PE=2 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg16251, jg20280, jg22059, jg8611
Aizoaceae Mesembryanthemum crystallinum 2 gene_308, gene_6472
Amaranthaceae Atriplex hortensis 1 Ah028258
Amaranthaceae Beta vulgaris 2 BVRB_7g167480, BVRB_8g183000
Amaranthaceae Salicornia bigelovii 5 Sbi_jg26043, Sbi_jg26535, Sbi_jg34031, Sbi_jg56959 ...
Sbi_jg9889
Amaranthaceae Salicornia europaea 2 Seu_jg15064, Seu_jg18834
Amaranthaceae Suaeda aralocaspica 2 GOSA_00011930, GOSA_00017054
Amaranthaceae Suaeda glauca 4 Sgl45950, Sgl50646, Sgl73822, Sgl77324
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000005931, gene:ENSEOMG00000037452 ...
gene:ENSEOMG00000041460
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.7AG0010420, CQ.Regalona.r1.7BG0012500 ...
CQ.Regalona.r1.8AG0005430, CQ.Regalona.r1.8BG0005590
Anacardiaceae Pistacia vera 2 pistato.v30014570, pistato.v30241180
Apiaceae Apium graveolens 3 Ag10G00753, Ag2G01249, Ag2G02796
Arecaceae Cocos nucifera 4 COCNU_07G000990, COCNU_08G011640, COCNU_09G009570 ...
COCNU_10G000720
Arecaceae Phoenix dactylifera 4 gene-LOC103703910, gene-LOC103706939, gene-LOC103711896 ...
gene-LOC103716258
Asparagaceae Asparagus officinalis 2 AsparagusV1_04.166.V1.1, AsparagusV1_07.1976.V1.1
Asteraceae Flaveria trinervia 4 Ftri10G04211, Ftri12G14860, Ftri15G01661, Ftri4G09309
Brassicaceae Arabidopsis thaliana 1 AT2G32700.7
Brassicaceae Eutrema salsugineum 1 Thhalv10016303m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp4g15040.v2.2, SpUn0199_0030.v2.2
Brassicaceae Brassica nigra 3 BniB01g011410.2N, BniB06g021800.2N, BniB08g020560.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq06G2005, Ceq07G0750
Casuarinaceae Casuarina glauca 2 Cgl06G2114, Cgl07G0795
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno10g00390
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g06810
Malvaceae Hibiscus hamabo Siebold & Zucc. 5 nbisL1-mrna-5394, nbisL1-mrna-6384, nbisL1-mrna-956 ...
nbisL1-mrna-9750, nbisL1-mrna-9751
Nitrariaceae Nitraria sibirica 3 evm.TU.LG04.1547, evm.TU.LG11.588, evm.TU.LG11.589
Plantaginaceae Plantago ovata 5 Pov_00012969, Pov_00015092, Pov_00024507, Pov_00024510 ...
Pov_00031791
Plumbaginaceae Limonium bicolor 1 Lb4G23999
Poaceae Echinochloa crus-galli 6 AH01.649, AH07.3919, BH01.73, BH07.3726, CH07.3787 ...
CH09.3263
Poaceae Eleusine coracana subsp. coracana 5 gene-QOZ80_1AG0009880, gene-QOZ80_1BG0058470 ...
gene-QOZ80_2AG0150070, gene-QOZ80_2BG0205530, gene-QOZ80_3AG0207350
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0537790.1, HORVU.MOREX.r3.6HG0628510.1
Poaceae Lolium multiflorum 2 gene-QYE76_026351, gene-QYE76_026670
Poaceae Oryza coarctata 6 Oco03G025040, Oco04G025520, Oco05G029570, Oco06G030530 ...
Oco07G010450, Oco08G010220
Poaceae Oryza sativa 3 LOC_Os02g56880.1, LOC_Os03g64300.1, LOC_Os04g43130.1
Poaceae Paspalum vaginatum 3 gene-BS78_01G001500, gene-BS78_03G081900 ...
gene-BS78_04G316500
Poaceae Puccinellia tenuiflora 4 Pt_Chr0106930, Pt_Chr0106931, Pt_Chr0604270, Pt_Chr0604343
Poaceae Sporobolus alterniflorus 8 Chr01G000040, Chr04G033050, Chr07G032170, Chr09G016760 ...
Chr0G014110, Chr12G038290, Chr13G001010, Chr15G000990
Poaceae Thinopyrum elongatum 1 Tel5E01G904500
Poaceae Triticum dicoccoides 4 gene_TRIDC5BG083790, gene_TRIDC6AG057060 ...
gene_TRIDC6BG066500, gene_TRIDC7BG000320
Poaceae Triticum aestivum 8 TraesCS5B02G568500.2, TraesCS5D02G560700.2 ...
TraesCS6A02G383400.1, TraesCS6B02G422600.1, TraesCS6B02G422700.1, TraesCS6D02G368200.1, TraesCS6D02G368300.1, TraesCS7B02G003100.1
Poaceae Zea mays 2 Zm00001eb065280_P001, Zm00001eb258660_P001
Poaceae Zoysia japonica 2 nbis-gene-13185, nbis-gene-8342
Poaceae Zoysia macrostachya 3 Zma_g14684, Zma_g17395, Zma_g8
Portulacaceae Portulaca oleracea 4 evm.TU.LG01.35, evm.TU.LG03.1014, evm.TU.LG04.712 ...
evm.TU.LG12.716
Posidoniaceae Posidonia oceanica 2 gene.Posoc06g01030, gene.Posoc06g19410
Rhizophoraceae Bruguiera sexangula 5 evm.TU.Scaffold_12_RagTag.838, evm.TU.Scaffold_12_RagTag.839 ...
evm.TU.Scaffold_3_RagTag.1369, evm.TU.Scaffold_5_RagTag.1202, evm.TU.Scaffold_6_RagTag.974
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-11670, nbisL1-mrna-15693, nbisL1-mrna-1695
Rhizophoraceae Ceriops tagal 6 nbisL1-mrna-12871, nbisL1-mrna-18194, nbisL1-mrna-20549 ...
nbisL1-mrna-3654, nbisL1-mrna-4048, nbisL1-mrna-9076
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-11247, nbisL1-mrna-18274, nbisL1-mrna-21576 ...
nbisL1-mrna-2616
Rhizophoraceae Kandelia candel 4 evm.TU.utg000006l.697, evm.TU.utg000011l.616 ...
evm.TU.utg000019l.416, evm.TU.utg000027l.132
Rhizophoraceae Kandelia obovata 6 Maker00001630, Maker00006284, Maker00006302, Maker00006307 ...
Maker00007482, Maker00013031
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-10624, nbisL1-mrna-12239, nbisL1-mrna-15147 ...
nbisL1-mrna-9846
Rhizophoraceae Rhizophora mangle 4 nbisL1-mrna-18131, nbisL1-mrna-19900, nbisL1-mrna-21933 ...
nbisL1-mrna-4366
Salicaceae Populus euphratica 4 populus_peu04067, populus_peu10049, populus_peu30918 ...
populus_peu34901
Solanaceae Lycium barbarum 7 gene-LOC132607240, gene-LOC132607261, gene-LOC132610110 ...
gene-LOC132622306, gene-LOC132622484, gene-LOC132640583, gene-LOC132640650
Solanaceae Solanum chilense 3 SOLCI001175500, SOLCI004650700, SOLCI005438600
Solanaceae Solanum pennellii 4 gene-LOC107011710, gene-LOC107023312, gene-LOC107028047 ...
gene-LOC107031289
Tamaricaceae Reaumuria soongarica 1 gene_7164
Tamaricaceae Tamarix chinensis 1 TC01G0621
Zosteraceae Zostera marina 3 Zosma01g38480.v3.1, Zosma01g38490.v3.1, Zosma05g22500.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.