Basic Information
Locus ID:
gene.Posoc06g18880
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Ankyrin repeats (3 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 112500846 | 112501547 | + | gene.Posoc06g18880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 25,052.88 Da | 59.63 | 63.30 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 35 | 79 | 7.7753E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 35 | 82 | 5.6E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 90 | 5.2E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 90 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 37 | 77 | 9.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 37 | 78 | 13.389211 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 52 | 61 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010246977.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185 isoform X1 [Nelumbo nucifera] | 0 |
| Q5ZIR9 | E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PSY7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_16G01060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology