Basic Information
Locus ID:
gene.Posoc06g18850
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 112464955 | 112477805 | + | gene.Posoc06g18850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 64,958.43 Da | 73.50 | 70.57 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 533 | 575 | 1.221E-15 | - |
| Pfam | PF13639 | Ring finger domain | 533 | 575 | 5.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 517 | 577 | 1.66E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 497 | 579 | 3.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 534 | 574 | 1.9E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 533 | 575 | 0.0035 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 534 | 575 | 13.108904 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 512 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_016570161.1 | E3 ubiquitin-protein ligase MPSR1 [Capsicum annuum] | 0 |
| Q9C1X4 | Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1 | 0 | |
| TrEMBL | A0A1U8GFT4 | E3 ubiquitin-protein ligase RNF181-like OS=Capsicum annuum OX=4072 GN=LOC107868099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc06g17900, gene.Posoc06g17910, gene.Posoc06g18850 |