Basic Information
Locus ID:
gene.Posoc06g17910
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 98777486 | 98778115 | + | gene.Posoc06g17910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.11 | 24,574.27 Da | 61.76 | 79.23 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 162 | 204 | 9.73324E-17 | - |
| Pfam | PF13639 | Ring finger domain | 162 | 204 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 207 | 5.82E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 208 | 3.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 163 | 203 | 1.9E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 162 | 204 | 0.003 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 204 | 13.359705 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G30460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010683168.1 | E3 ubiquitin-protein ligase MPSR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C1X4 | Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1 | 0 | |
| TrEMBL | A0A7J6V106 | E3 ubiquitin-protein ligase ring1-like protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_031764 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc06g17900, gene.Posoc06g17910, gene.Posoc06g18850 |