Basic Information
Locus ID:
gene.Posoc06g17900
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 98773335 | 98773775 | + | gene.Posoc06g17900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 17,409.01 Da | 90.59 | 60.69 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 99 | 141 | 3.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 143 | 1.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 145 | 1.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 140 | 1.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 141 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 74 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G30460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050907875.1 | E3 ubiquitin-protein ligase MPSR1-like [Pisum sativum] | 0 |
| Q9C1X4 | Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1 | 0 | |
| TrEMBL | A0A6B2LM11 | RING-type domain-containing protein (Fragment) OS=Arcella intermedia OX=1963864 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc06g17900, gene.Posoc06g17910, gene.Posoc06g18850 |