Basic Information
Locus ID:
gene.Posoc06g16450
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 90565020 | 90574339 | - | gene.Posoc06g16450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 24,989.78 Da | 40.99 | 84.28 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 117 | 202 | 1.6E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 117 | 216 | 3.59E-11 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 82 | 220 | 1.3E-14 | IPR036770 |
| SMART | SM00248 | ANK_2a | 115 | 147 | 340.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 178 | 207 | 6.5E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 178 | 202 | 11.293642 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 178 | 210 | 11.88812 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_039131306.1 | probable E3 ubiquitin-protein ligase XBOS32 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A843WB68 | ANK_REP_REGION domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_041324 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology