Basic Information
Locus ID:
gene.Posoc06g14980
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the glycosyltransferase 8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 78035039 | 78043811 | - | gene.Posoc06g14980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 156,939.81 Da | 45.87 | 87.35 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06429 | GT8_like_1 | 359 | 655 | 1.16735E-119 | - |
| Pfam | PF13041 | PPR repeat family | 967 | 1011 | 1.5E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1043 | 1069 | 0.042 | IPR002885 |
| Pfam | PF01501 | Glycosyl transferase family 8 | 328 | 643 | 1.5E-89 | IPR002495 |
| Pfam | PF13041 | PPR repeat family | 1169 | 1217 | 3.3E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1244 | 1268 | 0.051 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 867 | 896 | 1.5E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 839 | 865 | 0.61 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1071 | 1097 | 5.5E-7 | IPR002885 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 359 | 657 | 7.59E-65 | IPR029044 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 824 | 914 | 6.3E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 916 | 1028 | 5.4E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1029 | 1123 | 1.1E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1140 | 1359 | 2.6E-39 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 674 | 823 | 7.9E-15 | IPR011990 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 361 | 663 | 1.2E-42 | IPR029044 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 942 | 970 | 0.0017 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1142 | 1171 | 0.0022 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1071 | 1105 | 5.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 867 | 896 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1172 | 1205 | 3.1E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 970 | 1003 | 2.8E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1069 | 1103 | 11.312119 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 968 | 1002 | 10.829822 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1170 | 1204 | 12.769972 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 937 | 967 | 8.637562 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 865 | 899 | 10.13926 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 764 | 798 | 9.076014 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 124 | - | - |
| Coils | Coil | Coil | 290 | 310 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38270.2 | galacturonosyltransferase 3. Encodes a protein with putative galacturonosyltransferase activity. | 0 |
| RefSeq | XP_026394692.1 | probable galacturonosyltransferase 3 [Papaver somniferum] | 0 |
| Q0WQD2 | Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GAUT3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2N9FEG1 | NPC1_N domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13377 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27612, jg27613 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26338 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g212480 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10913, Sbi_jg10915, Sbi_jg10916, Sbi_jg47421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21663 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018759 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55601, Sgl60815 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015190, gene:ENSEOMG00000039054 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027890, CQ.Regalona.r1.7BG0001720 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30108780, pistato.v30169640 |
| Apiaceae | Apium graveolens | 1 | Ag10G00415 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005360 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701176 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2373.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G02897 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g064900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1847 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11039 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.424 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05603 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151770, gene-QOZ80_2BG0207140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0083550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020676 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G000060 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G609100, Tel1E01G609200, Tel1E01G609400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG054850, gene_TRIDC1BG062750 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G372800.1.cds1, TraesCS1B02G392800.1.cds1 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14772 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1953, evm.TU.LG15.1205 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2381 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.4 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18558 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599397 |
| Solanaceae | Solanum chilense | 1 | SOLCI003417500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006501 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8823 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23610.v3.1 |