Basic Information
Locus ID:
gene.Posoc06g13010
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 65605561 | 65608366 | - | gene.Posoc06g13010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 53,344.32 Da | 47.92 | 82.67 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 180 | 477 | 1.13E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 233 | 417 | 1.6E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 350 | 391 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 251 | 0.088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 300 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 358 | 400 | 10.307941 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009403502.1 | PREDICTED: uncharacterized protein LOC103987014 [Musa acuminata subsp. malaccensis] | 0 |
| TrEMBL | A0A1D1YKQ5 | Histone acetyltransferase type B subunit 2 (Fragment) OS=Anthurium amnicola OX=1678845 GN=HAT2_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08570 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13010 |
| Zosteraceae | Zostera marina | 2 | Zosma01g42490.v3.1, Zosma06g01650.v3.1 |