Basic Information
Locus ID:
gene.Posoc06g11610
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 55914703 | 55918012 | - | gene.Posoc06g11610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 21,364.73 Da | 56.73 | 97.58 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 38 | 64 | 0.01 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 9 | 90 | 5.71E-12 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 91 | 3.2E-10 | IPR036770 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 37 | 63 | 8.985412 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 37 | 63 | 9.00344 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_010255493.1 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like isoform X2 [Nelumbo nucifera] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7ZN01 | E3 ubiquitin-protein ligase XBAT33-like isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104596150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology