Basic Information
Locus ID:
gene.Posoc06g11590
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 55886222 | 55892616 | - | gene.Posoc06g11590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 64,313.01 Da | 52.03 | 86.44 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 262 | 325 | 4.0E-9 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 130 | 213 | 1.7E-17 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 398 | 461 | 2.83E-5 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 95 | 351 | 4.62E-47 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 464 | 4.0E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 238 | 352 | 2.6E-21 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 85 | 214 | 9.3E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 158 | 187 | 0.25 | IPR002110 |
| SMART | SM00248 | ANK_2a | 304 | 336 | 1.5E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 261 | 290 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 125 | 154 | 8.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 192 | 223 | 7.3 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 261 | 293 | 11.59431 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 125 | 156 | 12.726336 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 403 | 455 | 9.420654 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 192 | 213 | 9.197662 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 125 | 157 | 13.83795 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 304 | 330 | 10.65946 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 192 | 213 | 9.217119 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 261 | 290 | 10.895672 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 304 | 330 | 10.630358 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 418 | 427 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 558 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_039127713.1 | probable E3 ubiquitin-protein ligase XBOS33 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1Z1Z4 | E3 ubiquitin-protein ligase XBAT33 OS=Anthurium amnicola OX=1678845 GN=XBAT33_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology