Basic Information
Locus ID:
gene.Posoc06g11200
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 53912596 | 53918735 | - | gene.Posoc06g11200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 25,990.55 Da | 59.90 | 57.28 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 136 | 218 | 8.44816E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 208 | 2.7E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 130 | 207 | 1.03E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 132 | 222 | 1.5E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 137 | 214 | 3.7E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 222 | 12.065728 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_008790541.1 | RNA-binding protein 1 isoform X2 [Phoenix dactylifera] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NHZ7 | RNA-binding protein with multiple splicing OS=Zostera marina OX=29655 GN=ZOSMA_97G00140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology