Basic Information
Locus ID:
gene.Posoc06g09640
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 44729727 | 44733417 | - | gene.Posoc06g09640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 34,667.27 Da | 50.80 | 82.95 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 265 | 308 | 8.85601E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 64 | 194 | 1.94377E-39 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 265 | 308 | 3.0E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 98 | 177 | 4.5E-10 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 312 | 2.21E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 107 | 163 | 2.49E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 60 | 190 | 7.1E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 314 | 4.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 266 | 307 | 2.3E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 266 | 308 | 13.064645 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_020261655.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Asparagus officinalis] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BLG6 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103700883 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology