Basic Information
Locus ID:
gene.Posoc06g09370
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 43880652 | 43891180 | + | gene.Posoc06g09370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 200,496.44 Da | 49.89 | 85.96 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1419 | 1843 | 4.42999E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1466 | 1848 | 1.3E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 145 | 612 | 4.99E-39 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1412 | 1841 | 1.96E-95 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1719 | 1846 | 1.7E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 135 | 615 | 1.1E-55 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1359 | 1608 | 3.3E-43 | - |
| SMART | SM00185 | arm_5 | 302 | 341 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 260 | 300 | 100.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1430 | 1848 | 7.9E-81 | IPR000569 |
| SMART | SM00185 | arm_5 | 178 | 218 | 12.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1532 | 1848 | 55.963333 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1114 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010265985.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Nelumbo nucifera] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AT12 | HECT-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104603621 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology