Basic Information
Locus ID:
gene.Posoc06g08280
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 40353109 | 40365127 | - | gene.Posoc06g08280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 47,494.44 Da | 48.05 | 79.13 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 427 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 6.2E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 86 | 428 | 5.76E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 35 | 178 | 2.3E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 200 | 433 | 8.7E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 3.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 172 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 340 | 12.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 396 | 435 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 396 | 435 | 12.525585 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 12.657402 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 136 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 181 | 9.138305 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 415 | 429 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 415 | 429 | 5.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 5.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 114 | 128 | 5.6E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29860.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development. | 0 |
| RefSeq | XP_008802644.2 | LOW QUALITY PROTEIN: protein DECREASED SIZE EXCLUSION LIMIT 1 [Phoenix dactylifera] | 0 |
| Q3MV14 | Protein DECREASED SIZE EXCLUSION LIMIT 1 OS=Arabidopsis thaliana OX=3702 GN=DSE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P0Q0 | WD_REPEATS_REGION domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_4G01010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35543 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1192, gene_15988 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023541 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28876, Sbi_jg3058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000906 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11652, Sgl17150, Sgl74242 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014811, gene:ENSEOMG00000032728 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0016430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224740 |
| Apiaceae | Apium graveolens | 1 | Ag2G02688 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G001690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716434 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.3011.V1.1, AsparagusV1_04.1734.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G06431 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025433m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g007850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0926 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1000 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g02220 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0488s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19710 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.556 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26550 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.502, BH06.196, CH06.186 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0507380, gene-QOZ80_6BG0459450 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0297660.1, HORVU.MOREX.r3.7HG0644450.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027641 |
| Poaceae | Oryza coarctata | 1 | Oco12G001420 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g04040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G023900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402004, Pt_Chr0402041 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr06G024840, Chr07G019130, Chr07G019140, Chr11G023810 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G550900, Tel7E01G142600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG049660, gene_TRIDC3BG055900 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G344500.1, TraesCS3B02G376400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb378230_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40312 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29040 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.618, evm.TU.LG24.82 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1905 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17233 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11880 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1161 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007726 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15526 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3185 |
| Salicaceae | Populus euphratica | 1 | populus_peu35399 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614744 |
| Solanaceae | Solanum chilense | 1 | SOLCI003378700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004689 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1012 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2175 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26310.v3.1 |