Basic Information
Locus ID:
gene.Posoc06g04900
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ZnF_TTF
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 28037395 | 28041113 | - | gene.Posoc06g04900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 29,394.09 Da | 53.81 | 78.21 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14291 | Domain of unknown function (DUF4371) | 91 | 177 | 2.9E-17 | IPR025398 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 216 | 261 | 1.53E-6 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 195 | 263 | 4.7E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 213 | 250 | 0.0042 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 249 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 249 | 10.207686 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 191 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24130.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_050248400.1 | uncharacterized protein LOC126695618 [Quercus robur] | 0 |
| TrEMBL | A0A834Z803 | Integrase catalytic domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_014431 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g10670, gene.Posoc02g24750, gene.Posoc06g04880 ... |